C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019649 Ubb-001 ENSMUSG00000019505 10090 + 11:62551171-62553213 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019649
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019649 415.547±24.68 328.996±19.31 707.270±43.44 1303.643±380.83 327.239±92.32 453.801±30.69 250.444±38.01 488.782±68.63 393.301±226.05 456.507±36.40 252.018±17.23 364.883±52.83 459.956±232.67 842.714±393.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00058V CIL_00058V_0003 CGP 11:62524946-62553213

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005739 ISO mitochondrion
GO:0005829 TAS cytosol
GO:0007141 IMP male meiosis I
GO:0007144 IMP female meiosis I
GO:0008584 IMP male gonad development
GO:0008585 IMP female gonad development
GO:0010992 IMP:IGI ubiquitin homeostasis
GO:0021888 IMP hypothalamus gonadotrophin-releasing hormone neuron development
GO:0043005 ISO neuron projection
GO:0043025 ISO neuronal cell body
GO:0047497 ISO mitochondrion transport along microtubule
GO:0048812 ISO neuron projection morphogenesis
GO:0051881 ISO regulation of mitochondrial membrane potential
GO:0060612 IMP adipose tissue development
GO:0060613 IMP fat pad development
GO:0061136 ISO regulation of proteasomal protein catabolic process
GO:0072520 IMP seminiferous tubule development
GO:0097009 IMP energy homeostasis
GO:1901214 ISO regulation of neuron death
GO:1902255 ISO positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000035235 UBC-001 protein_coding Danio_rerio 0 1009
ENST00000302182 UBB-001 protein_coding Homo_sapiens 0 1173
ENST00000339647 UBC-001 protein_coding Homo_sapiens 0 1109
ENST00000376781 UBBP2-001 processed_pseudogene Homo_sapiens 0 270
ENST00000392399 UBBP1-001 processed_pseudogene Homo_sapiens 0 531
ENST00000395837 UBB-002 protein_coding Homo_sapiens 0 1173
ENST00000395839 UBB-003 protein_coding Homo_sapiens 0 1173
ENST00000445497 UBBP3-001 processed_pseudogene Homo_sapiens 0 272
ENST00000535788 UBB-005 protein_coding Homo_sapiens 0 839
ENST00000536769 UBC-007 protein_coding Homo_sapiens 0 1109
ENST00000538617 UBC-003 protein_coding Homo_sapiens 0 1103
ENST00000541272 UBC-016 protein_coding Homo_sapiens 0 627
ENST00000546120 UBC-201 protein_coding Homo_sapiens 0 837
ENST00000577640 UBB-008 protein_coding Homo_sapiens 0 911
ENST00000578649 UBB-009 processed_transcript Homo_sapiens 0 544
ENST00000578706 UBB-007 protein_coding Homo_sapiens 0 418
ENST00000578713 UBBP4-004 protein_coding Homo_sapiens 0 1029
ENST00000581769 UBBP4-002 protein_coding Homo_sapiens 0 379
ENST00000581775 UBBP4-005 protein_coding Homo_sapiens 0 363
ENST00000583708 UBBP4-003 protein_coding Homo_sapiens 0 1086
ENST00000584398 UBBP4-006 protein_coding Homo_sapiens 0 388
ENST00000584755 UBBP4-001 protein_coding Homo_sapiens 0 1378
ENST00000614404 UBB-201 protein_coding Homo_sapiens 0 1173

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