C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tachykinin receptor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020278 Tacr2-201 ENSMUSG00000020081 10090 + 10:62252438-62265990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000020278
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000020278 0.017±0.01 74.471±18.31 3.249±1.25 0.018±0.01 0.146±0.06 8.551±1.70 0.028±0.01 0.188±0.10 0.026±0.02 0.417±0.14 1.011±0.55 0.015±0.01 0.363±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TI CIL_0007TI_0002 VISTA 10:61828052-62430842
CIL_0006QL CIL_0006QL_0002 CGP 10:62185396-62265990
CIL_000742 CIL_000742_0002 CGP 10:62252438-62379908

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007217 IEA tachykinin receptor signaling pathway
GO:0014057 IEA positive regulation of acetylcholine secretion, neurotransmission
GO:0014827 IEA intestine smooth muscle contraction
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016497 IEA substance K receptor activity
GO:0033685 IEA negative regulation of luteinizing hormone secretion
GO:0035106 IEA operant conditioning
GO:0043117 IEA positive regulation of vascular permeability
GO:0043270 IEA positive regulation of ion transport
GO:0051602 IEA response to electrical stimulus
GO:0070459 IEA prolactin secretion
GO:0070474 IEA positive regulation of uterine smooth muscle contraction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000003278 tacr3l-001 protein_coding Danio_rerio 1e-19 102
ENST00000305249 TACR1-001 protein_coding Homo_sapiens 3e-39 169
ENST00000373306 TACR2-001 protein_coding Homo_sapiens 0 1206
ENST00000373307 TACR2-002 protein_coding Homo_sapiens 0 577
ENST00000409848 TACR1-002 protein_coding Homo_sapiens 2e-31 141
ENST00000619173 TACR2-201 protein_coding Homo_sapiens 0 1040

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