C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gamma-aminobutyric acid (GABA) A receptor, pi
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020366 Gabrp-001 ENSMUSG00000020159 10090 - 11:33550781-33578957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020366
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020366 4.083±4.07 0.027±0.00 0.610±0.35 1.312±0.16 0.160±0.10 0.634±0.63 0.139±0.05 0.125±0.17 26.405±0.88 0.014±0.00 5.446±2.31 5.509±5.07 0.102±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097F CIL_00097F_0002 VISTA 11:32999598-33601607
CIL_00088M CIL_00088M_0002 VISTA 11:33042866-33643782
CIL_000977 CIL_000977_0002 VISTA 11:33092412-33693558
CIL_00098H CIL_00098H_0002 VISTA 11:33099828-33701076
CIL_0008SG CIL_0008SG_0002 VISTA 11:33129906-33731024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004890 IEA GABA-A receptor activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005254 IEA chloride channel activity
GO:0006811 IEA ion transport
GO:0007165 IEA signal transduction
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0034707 IEA chloride channel complex
GO:0045211 IEA postsynaptic membrane
GO:1902476 IEA chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265294 GABRP-201 protein_coding Homo_sapiens 0 1668
ENST00000518525 GABRP-001 protein_coding Homo_sapiens 0 1668
ENST00000519385 GABRP-003 protein_coding Homo_sapiens 0 1070
ENST00000519598 GABRP-002 protein_coding Homo_sapiens 0 1306
ENST00000521009 GABRP-008 protein_coding Homo_sapiens 0 368
ENST00000521481 GABRP-010 protein_coding Homo_sapiens 0 695
ENST00000522868 GABRP-006 protein_coding Homo_sapiens 0 756

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