C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thioredoxin reductase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020484 Txnrd1-201 ENSMUSG00000020250 10090 + 10:82859206-82897724 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020484
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020484 17.774±2.27 23.819±4.25 24.108±2.09 28.932±13.39 14.350±4.04 38.190±7.92 10.330±0.71 31.548±1.38 28.429±5.50 17.683±2.59 20.203±3.26 21.690±7.08 19.307±11.31 4.559±2.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004AC CIL_0004AC_0002 CGP 10:82748701-82897724

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001707 IMP mesoderm formation
GO:0004791 IDA thioredoxin-disulfide reductase activity
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005829 IDA cytosol
GO:0007369 IMP gastrulation
GO:0008283 IMP cell proliferation
GO:0045454 IEA cell redox homeostasis
GO:0050660 IEA flavin adenine dinucleotide binding
GO:0050661 IEA NADP binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354940 TXNRD1-201 protein_coding Homo_sapiens 0 1742
ENST00000388854 TXNRD1-202 protein_coding Homo_sapiens 0 1751
ENST00000397736 TXNRD1-203 protein_coding Homo_sapiens 0 1652
ENST00000429002 TXNRD1-204 protein_coding Homo_sapiens 0 1714
ENST00000503506 TXNRD1-003 protein_coding Homo_sapiens 0 1770
ENST00000524698 TXNRD1-006 protein_coding Homo_sapiens 0 1679
ENST00000525265 TXNRD1-019 retained_intron Homo_sapiens 0 405
ENST00000525566 TXNRD1-001 protein_coding Homo_sapiens 0 1770
ENST00000526390 TXNRD1-017 protein_coding Homo_sapiens 0 1762
ENST00000526691 TXNRD1-002 protein_coding Homo_sapiens 0 1770
ENST00000526950 TXNRD1-009 protein_coding Homo_sapiens 0 1670
ENST00000527688 TXNRD1-007 nonsense_mediated_decay Homo_sapiens 0 1530
ENST00000529546 TXNRD1-004 protein_coding Homo_sapiens 0 1670

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