C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle 34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020550 Cdc34-201 ENSMUSG00000020307 10090 + 10:79682195-79688394 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonLiverLungMuscleOvaryENSMUST00000020550
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Liver Lung Muscle Ovary
ENSMUST00000020550 5.001±0.00 4.451±1.46 2.960±0.00 5.879±0.00 4.593±0.24 13.685±0.00 7.634±2.52 3.149±0.00 20.663±0.00 4.494±1.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0007DQ CIL_0007DQ_0002 CGP 10:79669410-79688394
CIL_0001FW CIL_0001FW_0002 CGP 10:79682195-79695261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006513 ISS protein monoubiquitination
GO:0007049 IEA cell cycle
GO:0016567 IEA protein ubiquitination
GO:0016881 IEA acid-amino acid ligase activity
GO:0043161 ISS proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0043525 IEA positive regulation of neuron apoptotic process
GO:0043951 IEA negative regulation of cAMP-mediated signaling
GO:0070848 IEA response to growth factor
GO:0070936 ISS protein K48-linked ubiquitination
GO:0090261 IEA positive regulation of inclusion body assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000215574 CDC34-001 protein_coding Homo_sapiens 0 1085
ENST00000586283 CDC34-005 protein_coding Homo_sapiens 0 822
ENST00000586788 CDC34-002 retained_intron Homo_sapiens 0 555
ENST00000593036 CDC34-006 processed_transcript Homo_sapiens 0 337
ENST00000606065 CDC34-004 protein_coding Homo_sapiens 0 658
ENST00000606400 CDC34-007 retained_intron Homo_sapiens 0 501
ENST00000607527 CDC34-003 protein_coding Homo_sapiens 0 276

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