C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SHC (Src homology 2 domain containing) transforming protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020564 Shc2-001 ENSMUSG00000020312 10090 - 10:79618652-79637918 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020564
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020564 2.490±1.42 1.616±0.57 0.930±0.34 7.401±2.22 3.138±1.58 1.284±0.59 0.392±0.01 0.291±0.07 0.082±0.06 0.622±0.30 1.497±0.61 3.901±1.57 0.646±0.48 1.216±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0005CP CIL_0005CP_0002 CGP 10:79606857-79637918
CIL_0007I4 CIL_0007I4_0002 CGP 10:79617940-79645738

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000187 IEA activation of MAPK activity
GO:0030971 IEA receptor tyrosine kinase binding
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264554 SHC2-001 protein_coding Homo_sapiens 0 867
ENST00000589922 SHC2-002 retained_intron Homo_sapiens 0 385
ENST00000590113 SHC2-006 processed_transcript Homo_sapiens 0 435
ENST00000590222 SHC2-007 nonsense_mediated_decay Homo_sapiens 0 558

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