C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6 kinase, polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020824 Rps6kb1-004 ENSMUSG00000020516 10090 - 11:86502033-86544805 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000020824
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000020824 3.033±0.28 2.068±0.26 1.438±0.00 1.719±0.19 2.143±0.00 1.902±0.00 2.258±0.22 4.928±0.10 5.736±1.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039N CIL_00039N_0002 CGP 11:86267033-86499025
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225577 RPS6KB1-001 protein_coding Homo_sapiens 0 1315
ENST00000393021 RPS6KB1-201 protein_coding Homo_sapiens 0 1315
ENST00000406116 RPS6KB1-002 protein_coding Homo_sapiens 0 948
ENST00000441215 AC126365.1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 719
ENST00000443572 RPS6KB1-008 protein_coding Homo_sapiens 0 896
ENST00000472940 RPS6KB1-003 nonsense_mediated_decay Homo_sapiens 0 3339
ENST00000475155 RPS6KB1-006 retained_intron Homo_sapiens 0 580
ENST00000477179 RPS6KB1-005 processed_transcript Homo_sapiens 0 616
ENST00000489824 RPS6KB1-004 nonsense_mediated_decay Homo_sapiens 0 688
ENST00000577881 RP11-51L5.3-001 unprocessed_pseudogene Homo_sapiens 0 689
ENST00000578210 AC126365.1-002 processed_transcript Homo_sapiens 0 828
ENST00000587622 RPS6KB1-009 retained_intron Homo_sapiens 0 479
ENST00000590928 RPS6KB1-010 retained_intron Homo_sapiens 0 313
ENST00000591035 RP11-178C3.1-001 protein_coding Homo_sapiens 0 237
ENST00000592726 RPS6KB1-007 protein_coding Homo_sapiens 0 381

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