C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuronal cell adhesion molecule
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020939 Nrcam-201 ENSMUSG00000020598 10090 + 12:44328885-44601846 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverTestisENSMUST00000020939
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Testis
ENSMUST00000020939 0.262±0.00 0.353±0.00 12.616±2.14 0.141±0.07 0.070±0.03 0.029±0.00 0.203±0.03 0.010±0.00 0.040±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PF CIL_0008PF_0002 VISTA 12:44102519-44705770
CIL_0008CE CIL_0008CE_0002 VISTA 12:44102792-44705590
CIL_00057O CIL_00057O_0002 CGP 12:44221370-44601846

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IEA angiogenesis
GO:0005515 IPI protein binding
GO:0005886 IDA plasma membrane
GO:0007411 IDA axon guidance
GO:0007417 IDA central nervous system development
GO:0008104 IDA protein localization
GO:0010975 IMP regulation of neuron projection development
GO:0016021 IEA integral component of membrane
GO:0016337 IDA single organismal cell-cell adhesion
GO:0019227 IMP neuronal action potential propagation
GO:0030424 IDA axon
GO:0030506 ISS ankyrin binding
GO:0031290 IMP retinal ganglion cell axon guidance
GO:0034113 IGI heterotypic cell-cell adhesion
GO:0045162 ISS clustering of voltage-gated sodium channels
GO:0045202 IDA synapse
GO:0086080 IGI protein binding involved in heterotypic cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351718 NRCAM-003 protein_coding Homo_sapiens 0 2326
ENST00000379022 NRCAM-201 protein_coding Homo_sapiens 0 3565
ENST00000379024 NRCAM-001 protein_coding Homo_sapiens 0 2739
ENST00000379028 NRCAM-202 protein_coding Homo_sapiens 0 3740
ENST00000413765 NRCAM-203 protein_coding Homo_sapiens 0 3740
ENST00000415105 NRCAM-012 retained_intron Homo_sapiens 0 444
ENST00000417701 NRCAM-005 protein_coding Homo_sapiens 0 1644
ENST00000418239 NRCAM-018 protein_coding Homo_sapiens 0 255
ENST00000419936 NRCAM-015 protein_coding Homo_sapiens 0 479
ENST00000425651 NRCAM-006 protein_coding Homo_sapiens 0 3598
ENST00000442580 NRCAM-017 protein_coding Homo_sapiens 0 420
ENST00000445634 NRCAM-011 protein_coding Homo_sapiens 0 566
ENST00000456431 NRCAM-016 protein_coding Homo_sapiens 0 481
ENST00000465585 NRCAM-013 processed_transcript Homo_sapiens 0 300
ENST00000489800 NRCAM-009 retained_intron Homo_sapiens 0 361
ENST00000522550 NRCAM-007 processed_transcript Homo_sapiens 0 841
ENST00000613830 NRCAM-204 protein_coding Homo_sapiens 0 2326

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