C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin beta 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021107 Itgb4-001 ENSMUSG00000020758 10090 + 11:115974709-116008412 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000021107
Transcript ID Adrenal Bladder Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000021107 0.462±0.04 2.669±1.23 1.127±0.00 0.293±0.00 0.489±0.10 0.025±0.00 0.133±0.00 1.072±0.00 1.132±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K8 CIL_0002K8_0003 CGP 11:115933282-116008412
CIL_00078P CIL_00078P_0002 CGP 11:115974709-116012719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 IEA receptor activity
GO:0005604 IDA basement membrane
GO:0007155 IMP cell adhesion
GO:0007160 IEA cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007275 IEA multicellular organismal development
GO:0008305 IDA integrin complex
GO:0009925 IDA basal plasma membrane
GO:0030056 IDA hemidesmosome
GO:0031581 IEA hemidesmosome assembly
GO:0043235 ISO receptor complex
GO:0046847 IMP filopodium assembly
GO:0048870 IEA cell motility

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000029308 itgb4-001 protein_coding Danio_rerio 0 281
ENST00000200181 ITGB4-001 protein_coding Homo_sapiens 0 4455
ENST00000449880 ITGB4-003 protein_coding Homo_sapiens 0 5830
ENST00000450894 ITGB4-002 protein_coding Homo_sapiens 0 4697
ENST00000578318 ITGB4-014 protein_coding Homo_sapiens 9e-32 141
ENST00000579211 ITGB4-013 retained_intron Homo_sapiens 0 244
ENST00000579662 ITGB4-007 protein_coding Homo_sapiens 0 4761
ENST00000580542 ITGB4-004 retained_intron Homo_sapiens 0 2905
ENST00000583327 ITGB4-011 protein_coding Homo_sapiens 0 569
ENST00000584025 ITGB4-010 retained_intron Homo_sapiens 0 355
ENST00000584374 ITGB4-009 processed_transcript Homo_sapiens 0 935
ENST00000584558 ITGB4-005 processed_transcript Homo_sapiens 0 2809
ENST00000584939 ITGB4-012 protein_coding Homo_sapiens 0 499

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