C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA splicing endonuclease 54 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021134 Tsen54-001 ENSMUSG00000020781 10090 + 11:115814724-115823094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021134
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021134 8.113±2.04 6.625±1.14 8.277±1.09 6.871±4.95 5.893±1.63 10.936±1.97 3.990±1.19 11.851±1.96 5.886±3.22 7.324±0.27 2.767±0.63 8.029±2.75 9.236±5.65 2.060±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PW CIL_0008PW_0002 VISTA 11:115369788-115971497
CIL_0007IY CIL_0007IY_0002 CGP 11:115799183-115823094
CIL_0007IP CIL_0007IP_0002 CGP 11:115814724-115855780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333213 TSEN54-001 protein_coding Homo_sapiens 0 1439
ENST00000434205 TSEN54-005 protein_coding Homo_sapiens 0 339
ENST00000578415 TSEN54-008 nonsense_mediated_decay Homo_sapiens 0 562
ENST00000580013 TSEN54-010 processed_transcript Homo_sapiens 0 580
ENST00000583173 TSEN54-007 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000583818 TSEN54-011 nonsense_mediated_decay Homo_sapiens 0 470

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