C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 13 (sodium-dependent citrate transporter), member 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021161 Slc13a5-001 ENSMUSG00000020805 10090 - 11:72241994-72266602 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021161
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021161 0.319±0.32 0.041±0.02 0.028±0.02 0.691±0.44 0.028±0.00 0.052±0.02 0.016±0.01 0.029±0.02 0.444±0.30 0.013±0.00 0.008±0.00 0.216±0.09 0.030±0.02 10.914±4.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00033A CIL_00033A_0002 CGP 11:72211724-72267222
CIL_0000HE CIL_0000HE_0002 CGP 11:72241994-72313733

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005343 IEA organic acid:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0006814 IEA sodium ion transport
GO:0006842 IDA tricarboxylic acid transport
GO:0015137 IDA citrate transmembrane transporter activity
GO:0015141 IDA succinate transmembrane transporter activity
GO:0015142 IDA tricarboxylic acid transmembrane transporter activity
GO:0015744 IDA succinate transport
GO:0015746 IDA citrate transport
GO:0016021 IEA integral component of membrane
GO:0016323 IEA basolateral plasma membrane
GO:0017153 IEA sodium:dicarboxylate symporter activity
GO:0035674 IDA tricarboxylic acid transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293800 SLC13A5-004 protein_coding Homo_sapiens 0 917
ENST00000314669 SLC13A2-001 protein_coding Homo_sapiens 3e-17 95
ENST00000381074 SLC13A5-003 protein_coding Homo_sapiens 0 1105
ENST00000433363 SLC13A5-001 protein_coding Homo_sapiens 0 1306
ENST00000444914 SLC13A2-002 protein_coding Homo_sapiens 3e-17 95
ENST00000459818 SLC13A2-005 nonsense_mediated_decay Homo_sapiens 3e-17 95
ENST00000541739 SLC13A2-006 retained_intron Homo_sapiens 1e-17 95
ENST00000545060 SLC13A2-201 protein_coding Homo_sapiens 1e-17 95
ENST00000570687 SLC13A5-012 protein_coding Homo_sapiens 0 230
ENST00000572094 SLC13A5-014 nonsense_mediated_decay Homo_sapiens 0 654
ENST00000572352 SLC13A5-013 protein_coding Homo_sapiens 0 278
ENST00000572727 SLC13A5-011 protein_coding Homo_sapiens 0 440
ENST00000573648 SLC13A5-002 protein_coding Homo_sapiens 0 1066
ENST00000574580 SLC13A5-007 retained_intron Homo_sapiens 2e-26 126
ENST00000574824 SLC13A5-005 retained_intron Homo_sapiens 0 429
ENST00000575230 SLC13A5-008 nonsense_mediated_decay Homo_sapiens 1e-39 167
ENST00000576323 SLC13A5-010 protein_coding Homo_sapiens 0 392
ENST00000577903 SLC13A2-003 nonsense_mediated_decay Homo_sapiens 2e-17 95
ENST00000579281 SLC13A2-004 nonsense_mediated_decay Homo_sapiens 2e-17 95

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