C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: netrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021284 Ntn1-201 ENSMUSG00000020902 10090 - 11:68209364-68386826 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021284
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021284 11.348±6.11 6.984±0.40 9.707±0.54 11.149±7.37 8.922±1.98 14.214±0.42 13.398±1.41 12.671±1.95 1.406±1.16 26.967±1.31 1.379±0.22 8.151±3.26 9.199±7.08 0.746±0.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IMP neuron migration
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0007409 IDA axonogenesis
GO:0007411 IMP axon guidance
GO:0008284 IMP positive regulation of cell proliferation
GO:0016337 IGI single organismal cell-cell adhesion
GO:0030334 IDA regulation of cell migration
GO:0030517 IDA negative regulation of axon extension
GO:0030879 IGI mammary gland development
GO:0033564 IMP anterior/posterior axon guidance
GO:0040023 IDA establishment of nucleus localization
GO:0042472 IMP inner ear morphogenesis
GO:0045773 IDA positive regulation of axon extension
GO:0060603 IGI mammary gland duct morphogenesis
GO:0071944 ISO cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000039482 ntn1b-001 protein_coding Danio_rerio 0 1016
ENSDART00000148565 ntn1a-001 protein_coding Danio_rerio 3e-16 94
ENST00000173229 NTN1-001 protein_coding Homo_sapiens 0 2675

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