C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vaccinia related kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021539 Vrk1-201 ENSMUSG00000021115 10090 + 12:106010263-106077410 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000021539
Transcript ID Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000021539 0.692±0.30 0.405±0.00 0.418±0.06 0.192±0.02 0.153±0.03 1.754±0.63 1.364±0.00 1.567±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HJ CIL_0003HJ_0002 CGP 12:105784694-106077410
CIL_0007JE CIL_0007JE_0002 UCNEbase 12:105838681-106687937

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IDA protein serine/threonine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0005795 ISS Golgi stack
GO:0005856 IEA cytoskeleton
GO:0006468 IDA protein phosphorylation
GO:0007067 IEA mitotic nuclear division
GO:0031493 IEA nucleosomal histone binding
GO:0035175 IEA histone kinase activity (H3-S10 specific)
GO:0043987 IEA histone H3-S10 phosphorylation
GO:0046777 IDA protein autophosphorylation
GO:0072354 IEA histone kinase activity (H3-T3 specific)
GO:0072355 IEA histone H3-T3 phosphorylation
GO:0090166 ISS Golgi disassembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216639 VRK1-001 protein_coding Homo_sapiens 0 1177
ENST00000555351 VRK1-002 retained_intron Homo_sapiens 0 586
ENST00000557222 VRK1-003 protein_coding Homo_sapiens 0 660
ENST00000557352 VRK1-006 protein_coding Homo_sapiens 0 387

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