C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 2010111I01 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000021911 2010111I01Rik-201 ENSMUSG00000021458 10090 + 13:63015167-63302284 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000021911
Transcript ID Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000021911 4.230±0.00 11.040±0.00 5.218±1.72 7.347±2.39 1.927±0.47 12.905±0.00 3.034±0.36 4.010±0.00 2.641±0.50 3.203±0.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002J6 CIL_0002J6_0002 CGP 13:62864753-63326096
CIL_0002J5 CIL_0002J5_0002 CGP 13:63014934-63497278

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005730 IDA nucleolus
GO:0006508 IEA proteolysis
GO:0008237 IEA metallopeptidase activity
GO:0008270 IEA zinc ion binding
GO:0019370 IEA leukotriene biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000277198 C9orf3-004 protein_coding Homo_sapiens 0 1485
ENST00000297979 C9orf3-002 protein_coding Homo_sapiens 0 1179
ENST00000375315 C9orf3-201 protein_coding Homo_sapiens 0 2209
ENST00000424143 C9orf3-006 protein_coding Homo_sapiens 0 728
ENST00000427193 C9orf3-003 protein_coding Homo_sapiens 0 399
ENST00000428313 C9orf3-008 protein_coding Homo_sapiens 0 1648
ENST00000445181 C9orf3-015 protein_coding Homo_sapiens 0 351
ENST00000463372 C9orf3-001 processed_transcript Homo_sapiens 0 449
ENST00000468164 C9orf3-007 processed_transcript Homo_sapiens 0 381
ENST00000478473 C9orf3-016 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000489318 C9orf3-021 processed_transcript Homo_sapiens 0 252
ENST00000489562 C9orf3-005 processed_transcript Homo_sapiens 0 283

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