C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphomannomutase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023396 Pmm2-001 ENSMUSG00000022711 10090 + 16:8637674-8657531 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023396
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023396 18.673±9.22 33.490±14.08 17.587±1.61 12.417±2.34 31.973±5.77 131.448±32.86 8.549±2.65 25.302±6.55 17.372±6.02 19.880±5.42 6.759±0.52 19.485±9.69 24.675±9.66 25.665±5.88

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000EU CIL_0000EU_0002 CGP 16:8513429-8637712
CIL_0000ET CIL_0000ET_0002 CGP 16:8633884-8657531
CIL_0000EW CIL_0000EW_0002 CGP 16:8637674-8672153

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004615 IEA phosphomannomutase activity
GO:0005737 IDA cytoplasm
GO:0009298 IEA GDP-mannose biosynthetic process
GO:0019307 IEA mannose biosynthetic process
GO:0043025 IDA neuronal cell body
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268261 PMM2-001 protein_coding Homo_sapiens 0 852
ENST00000562025 PMM2-017 processed_transcript Homo_sapiens 6e-23 111
ENST00000562318 PMM2-003 nonsense_mediated_decay Homo_sapiens 0 549
ENST00000564069 PMM2-014 nonsense_mediated_decay Homo_sapiens 0 660
ENST00000565221 PMM2-006 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000565896 PMM2-012 nonsense_mediated_decay Homo_sapiens 2.8026e-45 185
ENST00000566540 PMM2-004 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000566604 PMM2-002 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000566983 PMM2-018 protein_coding Homo_sapiens 0 795
ENST00000567697 PMM2-007 retained_intron Homo_sapiens 0 459
ENST00000569958 PMM2-015 protein_coding Homo_sapiens 0 303
ENST00000570076 PMM2-005 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000570134 PMM2-016 nonsense_mediated_decay Homo_sapiens 0 204

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