C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 50B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023686 Tmem50b-001 ENSMUSG00000022964 10090 - 16:91574503-91597800 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023686
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023686 30.671±4.24 26.446±3.71 36.184±3.75 17.189±4.86 21.106±5.28 30.858±3.74 27.398±5.55 18.392±2.67 3.271±0.94 69.041±1.43 5.647±0.64 18.102±3.88 3.999±1.77 14.719±6.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UY CIL_0007UY_0002 VISTA 16:90990868-91593443
CIL_0003V2 CIL_0003V2_0002 CGP 16:91547072-91597800
CIL_00021F CIL_00021F_0002 CGP 16:91574503-91619026

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000420455 TMEM50B-002 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000432504 TMEM50B-005 protein_coding Homo_sapiens 0 261
ENST00000441128 TMEM50B-011 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000442441 TMEM50B-004 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000474272 TMEM50B-006 retained_intron Homo_sapiens 0 219
ENST00000542230 TMEM50B-001 protein_coding Homo_sapiens 0 579
ENST00000571778 TMEM50B-002 nonsense_mediated_decay Homo_sapiens 0 575
ENST00000572455 TMEM50B-011 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000573342 TMEM50B-006 retained_intron Homo_sapiens 0 219
ENST00000573374 TMEM50B-001 protein_coding Homo_sapiens 0 579
ENST00000573687 TMEM50B-004 nonsense_mediated_decay Homo_sapiens 0 416
ENST00000574612 TMEM50B-005 protein_coding Homo_sapiens 0 261
ENST00000603942 CTC-471J1.10-001 processed_pseudogene Homo_sapiens 0 296

Loading