C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023803 Krt18-201 ENSMUSG00000023043 10090 + 15:102028216-102032026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023803
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023803 20.255±19.61 0.600±0.13 275.351±42.74 1.407±0.52 130.103±32.37 227.158±11.46 2.356±1.28 11.759±1.80 53.760±17.03 36.763±2.33 0.203±0.23 73.014±13.10 1383.924±1107.14 1.928±1.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006T8 CIL_0006T8_0002 CGP 15:101996711-102032026
CIL_0006TF CIL_0006TF_0002 CGP 15:102028216-102097172

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005815 IEA microtubule organizing center
GO:0005882 IDA intermediate filament
GO:0033209 IGI tumor necrosis factor-mediated signaling pathway
GO:0034451 IEA centriolar satellite
GO:0043000 IEA Golgi to plasma membrane CFTR protein transport
GO:0043066 IEA negative regulation of apoptotic process
GO:0044822 IEA poly(A) RNA binding
GO:0045095 IDA keratin filament
GO:0045104 IEA intermediate filament cytoskeleton organization
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 IDA cell periphery
GO:0097110 IEA scaffold protein binding
GO:0097191 IMP extrinsic apoptotic signaling pathway
GO:0097284 IMP hepatocyte apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312876 KRT18P60-001 processed_pseudogene Homo_sapiens 0 773
ENST00000388835 KRT18-002 protein_coding Homo_sapiens 0 1227
ENST00000388837 KRT18-201 protein_coding Homo_sapiens 0 1221
ENST00000395181 KRT18P19-001 processed_pseudogene Homo_sapiens 0 523
ENST00000396959 KRT18P17-001 processed_pseudogene Homo_sapiens 0 937
ENST00000397031 KRT18P29-001 processed_pseudogene Homo_sapiens 0 859
ENST00000398525 KRT18P33-001 processed_pseudogene Homo_sapiens 0 780
ENST00000400056 KRT18P13-001 processed_pseudogene Homo_sapiens 0 813
ENST00000402024 KRT18P22-001 processed_pseudogene Homo_sapiens 0 843
ENST00000404337 KRT18P50-001 processed_pseudogene Homo_sapiens 0 532
ENST00000412958 KRT18P1-001 processed_pseudogene Homo_sapiens 0 885
ENST00000415349 KRT18P39-001 processed_pseudogene Homo_sapiens 0 782
ENST00000416086 KRT18P44-001 processed_pseudogene Homo_sapiens 0 802
ENST00000422599 KRT18P4-001 processed_pseudogene Homo_sapiens 0 904
ENST00000424695 KRT18P32-001 processed_pseudogene Homo_sapiens 0 931
ENST00000425245 KRT18P12-001 processed_pseudogene Homo_sapiens 0 797
ENST00000427733 KRT18P27-001 processed_pseudogene Homo_sapiens 0 841
ENST00000434763 KRT18P48-001 processed_pseudogene Homo_sapiens 0 656
ENST00000435622 KRT18P23-001 processed_pseudogene Homo_sapiens 0 878
ENST00000436075 KRT18P5-001 processed_pseudogene Homo_sapiens 0 929
ENST00000439811 KRT18P65-001 processed_pseudogene Homo_sapiens 0 878
ENST00000443599 KRT18P57-001 processed_pseudogene Homo_sapiens 0 809
ENST00000446694 KRT18P1-001 processed_pseudogene Homo_sapiens 0 885
ENST00000447122 KRT18P1-001 processed_pseudogene Homo_sapiens 0 885
ENST00000449496 KRT18P38-001 processed_pseudogene Homo_sapiens 0 798
ENST00000451602 KRT18P3-001 processed_pseudogene Homo_sapiens 0 891
ENST00000452408 KRT18P1-001 processed_pseudogene Homo_sapiens 0 885
ENST00000452970 KRT18P66-001 processed_pseudogene Homo_sapiens 0 665
ENST00000453838 KRT18P28-001 processed_pseudogene Homo_sapiens 0 859
ENST00000454169 KRT18P1-001 processed_pseudogene Homo_sapiens 0 885
ENST00000458108 KRT18P15-001 processed_pseudogene Homo_sapiens 0 907
ENST00000469825 KRT18P43-001 processed_pseudogene Homo_sapiens 0 728
ENST00000488218 KRT18P34-001 processed_pseudogene Homo_sapiens 0 773
ENST00000491277 PTPN14-002 processed_transcript Homo_sapiens 0 787
ENST00000506277 KRT18P31-001 processed_pseudogene Homo_sapiens 0 837
ENST00000507275 KRT18P56-001 processed_pseudogene Homo_sapiens 0 364
ENST00000508931 KRT18P25-001 processed_pseudogene Homo_sapiens 0 874
ENST00000510337 KRT18P16-001 processed_pseudogene Homo_sapiens 0 918
ENST00000510488 KRT18P35-001 processed_pseudogene Homo_sapiens 0 774
ENST00000513396 KRT18P54-001 processed_pseudogene Homo_sapiens 0 372
ENST00000518924 KRT18P41-001 processed_pseudogene Homo_sapiens 0 854
ENST00000524879 KRT18P59-001 transcribed_processed_pseudogene Homo_sapiens 0 652
ENST00000527480 KRT18P58-001 processed_pseudogene Homo_sapiens 0 798
ENST00000534205 KRT18P14-001 processed_pseudogene Homo_sapiens 0 948
ENST00000534728 KRT18P59-002 processed_transcript Homo_sapiens 0 688
ENST00000548015 KRT18-004 retained_intron Homo_sapiens 0 494
ENST00000548986 KRT18P20-001 processed_pseudogene Homo_sapiens 0 863
ENST00000549078 KRT18-003 retained_intron Homo_sapiens 0 706
ENST00000550600 KRT18-001 protein_coding Homo_sapiens 0 1112
ENST00000555540 KRT18P6-001 processed_pseudogene Homo_sapiens 0 719
ENST00000557241 KRT18P7-001 processed_pseudogene Homo_sapiens 0 640
ENST00000565278 KRT18P18-001 transcribed_processed_pseudogene Homo_sapiens 0 898
ENST00000581937 KRT18P8-001 processed_pseudogene Homo_sapiens 0 918
ENST00000585825 KRT18P61-001 processed_pseudogene Homo_sapiens 0 763

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