C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FYVE, RhoGEF and PH domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024810 Fgd2-001 ENSMUSG00000024013 10090 + 17:29360942-29379553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024810
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024810 4.765±0.85 1.820±0.77 4.276±0.74 0.863±0.24 14.976±7.79 3.619±1.06 1.143±0.37 1.530±0.40 2.398±1.49 9.234±3.20 0.165±0.08 3.748±1.63 0.506±0.49 3.903±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0002Y4 CIL_0002Y4_0002 CGP 17:29332072-29379660
CIL_0002Y3 CIL_0002Y3_0002 CGP 17:29360914-29496111

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005634 IEA nucleus
GO:0005768 IEA endosome
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0042995 IEA cell projection
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000274963 FGD2-001 protein_coding Homo_sapiens 0 1796
ENST00000373535 FGD2-003 nonsense_mediated_decay Homo_sapiens 0 961
ENST00000375135 FGD1-001 protein_coding Homo_sapiens 0.000000003 69
ENST00000464083 FGD2-006 retained_intron Homo_sapiens 0 1238
ENST00000470273 FGD2-008 retained_intron Homo_sapiens 0 616
ENST00000487920 FGD2-010 retained_intron Homo_sapiens 0 473
ENST00000493635 FGD2-009 retained_intron Homo_sapiens 0 462
ENST00000494343 FGD2-007 retained_intron Homo_sapiens 0 1528

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