C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cap methyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024816 Cmtr1-001 ENSMUSG00000024019 10090 + 17:29660595-29705979 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000024816
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000024816 5.495±1.12 7.056±1.82 7.980±0.85 8.851±0.29 6.160±0.80 5.786±0.66 3.705±0.44 4.303±0.93 5.462±0.91 5.501±0.84 2.990±0.87 8.665±2.20 5.544±1.56 5.019±0.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0001Z5 CIL_0001Z5_0002 CGP 17:29614876-29705979
CIL_0001Z6 CIL_0001Z6_0002 CGP 17:29660595-29717012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004483 ISS mRNA (nucleoside-2'-O-)-methyltransferase activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006370 ISS 7-methylguanosine mRNA capping
GO:0080009 ISS mRNA methylation
GO:0097309 ISS cap1 mRNA methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373451 CMTR1-001 protein_coding Homo_sapiens 0 2907
ENST00000455891 CMTR1-002 protein_coding Homo_sapiens 0 758
ENST00000457419 CMTR1-007 protein_coding Homo_sapiens 0 468
ENST00000471097 CMTR1-009 processed_transcript Homo_sapiens 0 204
ENST00000475364 CMTR1-004 nonsense_mediated_decay Homo_sapiens 0 313
ENST00000493656 CMTR1-003 processed_transcript Homo_sapiens 4e-39 165

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