C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000024817 Rnf8-001 ENSMUSG00000090083 10090 + 17:29614790-29641664 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000024817
Transcript ID Adipose Brain Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000024817 17.791±0.67 18.313±0.00 17.766±0.75 13.658±0.52 14.952±3.60 17.665±0.76 6.472±0.74 26.085±9.98 13.155±1.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089L CIL_00089L_0002 VISTA 17:29133661-29735358
CIL_0005CZ CIL_0005CZ_0002 CGP 17:29549788-29641664

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 ISS ubiquitin ligase complex
GO:0000781 IDA chromosome, telomeric region
GO:0003682 ISS chromatin binding
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005634 ISS nucleus
GO:0006302 ISS double-strand break repair
GO:0006303 IMP double-strand break repair via nonhomologous end joining
GO:0006511 ISS ubiquitin-dependent protein catabolic process
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0007067 IEA mitotic nuclear division
GO:0007286 IMP spermatid development
GO:0008270 ISS zinc ion binding
GO:0010212 ISS response to ionizing radiation
GO:0016881 IEA acid-amino acid ligase activity
GO:0033522 IMP histone H2A ubiquitination
GO:0033523 IMP histone H2B ubiquitination
GO:0034244 ISS negative regulation of transcription elongation from RNA polymerase II promoter
GO:0035861 ISS site of double-strand break
GO:0042393 IMP histone binding
GO:0042803 ISS protein homodimerization activity
GO:0043486 IMP histone exchange
GO:0045190 IMP isotype switching
GO:0045739 ISS positive regulation of DNA repair
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070535 ISS histone H2A K63-linked ubiquitination
GO:0070936 ISS protein K48-linked ubiquitination

Homologs

No Homologs available.

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