C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AFG3-like AAA ATPase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025408 Afg3l2-201 ENSMUSG00000024527 10090 - 18:67404767-67449166 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025408 18.844±0.83 39.973±4.72 17.007±2.13 11.872±3.93 16.999±4.89 39.520±3.83 28.639±3.00 31.043±2.11 20.452±5.37 11.914±1.64 18.903±3.14 24.141±3.98 18.708±6.14 10.998±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZP CIL_0007ZP_0002 VISTA 18:67068230-67671525
CIL_0005DV CIL_0005DV_0002 CGP 18:67390717-67449166
CIL_0005DU CIL_0005DU_0002 CGP 18:67404767-67480581

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004222 IEA metalloendopeptidase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006508 IEA proteolysis
GO:0007005 IGI mitochondrion organization
GO:0007409 IMP axonogenesis
GO:0007528 IMP neuromuscular junction development
GO:0008053 IGI mitochondrial fusion
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane
GO:0016265 IMP death
GO:0021675 IMP nerve development
GO:0034982 IGI mitochondrial protein processing
GO:0040014 IMP regulation of multicellular organism growth
GO:0042407 IGI cristae formation
GO:0042552 IMP myelination
GO:0048747 IMP muscle fiber development
GO:0060013 IMP righting reflex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000089834 afg3l2-001 protein_coding Danio_rerio 0 1050
ENST00000269143 AFG3L2-001 protein_coding Homo_sapiens 0 2409
ENST00000521792 AFG3L2P1-001 processed_pseudogene Homo_sapiens 0 1513
ENST00000590811 AFG3L2-002 protein_coding Homo_sapiens 0 717
ENST00000591909 TUBB6-006 protein_coding Homo_sapiens 1.96182e-44 183

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