C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fatty acid desaturase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025567 Fads2-201 ENSMUSG00000024665 10090 - 19:10064164-10101503 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025567
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025567 17.499±9.33 456.048±133.64 48.045±7.50 50.435±9.42 10.567±2.41 81.846±17.02 2.161±0.42 59.778±11.75 137.961±94.41 23.580±3.03 0.785±0.21 90.306±35.58 16.223±8.52 29.908±7.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002MK CIL_0002MK_0002 CGP 19:10064164-10196870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004768 IDA stearoyl-CoA 9-desaturase activity
GO:0005506 IEA iron ion binding
GO:0005783 IEA endoplasmic reticulum
GO:0006636 IEA unsaturated fatty acid biosynthetic process
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0020037 IEA heme binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257261 FADS2-001 protein_coding Homo_sapiens 0 1347
ENST00000278840 FADS2-003 protein_coding Homo_sapiens 0 1600
ENST00000355484 FADS2-014 protein_coding Homo_sapiens 0 634
ENST00000517312 FADS2-009 protein_coding Homo_sapiens 0 617
ENST00000518606 FADS2-010 protein_coding Homo_sapiens 0 544
ENST00000521571 FADS2-013 protein_coding Homo_sapiens 0 545
ENST00000521849 FADS2-004 protein_coding Homo_sapiens 0 1360
ENST00000522056 FADS2-002 protein_coding Homo_sapiens 0 1347
ENST00000522359 FADS2-006 retained_intron Homo_sapiens 0 383
ENST00000523235 FADS2-005 retained_intron Homo_sapiens 0 761

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