C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aldehyde dehydrogenase 18 family, member A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000025979 Aldh18a1-001 ENSMUSG00000025007 10090 - 19:40550257-40588463 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000025979
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000025979 9.605±7.16 3.552±1.51 18.713±2.89 19.149±0.59 3.909±1.34 3.927±1.62 2.383±0.61 0.842±0.48 12.057±6.65 3.407±0.36 0.822±0.26 13.076±3.29 18.368±11.72 1.116±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095J CIL_00095J_0002 VISTA 19:40075645-40678667
CIL_0007T2 CIL_0007T2_0002 VISTA 19:40167411-40768695
CIL_00067I CIL_00067I_0002 CGP 19:40295049-40588463
CIL_00067D CIL_00067D_0002 CGP 19:40550257-40612233

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004349 IDA glutamate 5-kinase activity
GO:0004350 ISS glutamate-5-semialdehyde dehydrogenase activity
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005743 IEA mitochondrial inner membrane
GO:0006536 ISS glutamate metabolic process
GO:0006561 ISS proline biosynthetic process
GO:0006592 IEA ornithine biosynthetic process
GO:0008652 TAS cellular amino acid biosynthetic process
GO:0016310 IDA:IEA phosphorylation
GO:0019240 ISS citrulline biosynthetic process
GO:0044822 IEA poly(A) RNA binding
GO:0055114 IEA oxidation-reduction process
GO:0055129 IEA L-proline biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371221 ALDH18A1-002 protein_coding Homo_sapiens 0 2796
ENST00000371224 ALDH18A1-001 protein_coding Homo_sapiens 0 2830
ENST00000483788 ALDH18A1-004 processed_transcript Homo_sapiens 0 660
ENST00000485428 ALDH18A1-005 processed_transcript Homo_sapiens 0 806
ENST00000489386 ALDH18A1-003 processed_transcript Homo_sapiens 0 484

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