C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tetraspanin 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026585 Tspan4-001 ENSMUSG00000025511 10090 + 7:141475240-141493427 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000026585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000026585 33.124±3.78 71.574±6.17 26.200±0.00 5.138±0.50 38.640±6.90 7.180±0.86 8.638±2.03 24.359±4.67 22.760±3.99 24.598±11.80 1.979±0.11 114.336±42.70 26.356±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003EQ CIL_0003EQ_0002 CGP 7:141471860-141493427
CIL_0003ER CIL_0003ER_0002 CGP 7:141475240-141539857

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003823 IEA antigen binding
GO:0005178 IEA integrin binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005925 IEA focal adhesion
GO:0006461 IEA protein complex assembly
GO:0016021 IEA integral component of membrane
GO:0031982 IEA vesicle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000346501 TSPAN4-017 protein_coding Homo_sapiens 0 409
ENST00000397397 TSPAN4-001 protein_coding Homo_sapiens 0 869
ENST00000397404 TSPAN4-202 protein_coding Homo_sapiens 0 869
ENST00000397406 TSPAN4-203 protein_coding Homo_sapiens 0 869
ENST00000397408 TSPAN4-204 protein_coding Homo_sapiens 0 869
ENST00000397411 TSPAN4-006 protein_coding Homo_sapiens 0 881
ENST00000409531 TSPAN4-005 protein_coding Homo_sapiens 0 865
ENST00000409543 TSPAN4-007 protein_coding Homo_sapiens 0 867
ENST00000464987 TSPAN4-002 retained_intron Homo_sapiens 2e-28 132
ENST00000524895 TSPAN4-012 retained_intron Homo_sapiens 3e-29 132
ENST00000526055 TSPAN4-013 retained_intron Homo_sapiens 0 331
ENST00000527644 TSPAN4-010 protein_coding Homo_sapiens 0 588
ENST00000530404 TSPAN4-011 protein_coding Homo_sapiens 0 331
ENST00000532375 TSPAN4-018 protein_coding Homo_sapiens 4e-29 132

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