C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 4A3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026667 Eif4a3-001 ENSMUSG00000025580 10090 - 11:119288363-119300089 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026667
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026667 41.758±9.69 23.501±1.36 38.403±3.35 41.792±18.72 29.042±7.61 33.016±9.46 23.433±6.30 39.926±2.41 42.111±23.66 37.655±5.08 13.697±1.13 46.253±11.83 55.033±24.72 25.945±11.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00005R CIL_00005R_0002 CGP 11:119267887-119300089
CIL_00031S CIL_00031S_0002 CGP 11:119288363-119345375

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0000381 ISS regulation of alternative mRNA splicing, via spliceosome
GO:0003729 IEA mRNA binding
GO:0004004 IEA ATP-dependent RNA helicase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0008143 IEA poly(A) binding
GO:0008380 IEA RNA splicing
GO:0016020 IEA membrane
GO:0017148 IEA negative regulation of translation
GO:0035145 IEA exon-exon junction complex
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IEA positive regulation of translation
GO:0048701 ISS embryonic cranial skeleton morphogenesis
GO:0051028 IEA mRNA transport
GO:0071013 IEA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000014887 eif4a3-001 protein_coding Danio_rerio 0 1123
ENSDART00000156937 eif4a3-004 retained_intron Danio_rerio 0 560
ENSDART00000154277 eif4a3-002 nonsense_mediated_decay Danio_rerio 0 270
ENST00000269349 EIF4A3-001 protein_coding Homo_sapiens 0 1408
ENST00000570625 EIF4A3-010 retained_intron Homo_sapiens 2e-22 110
ENST00000575957 EIF4A3-004 retained_intron Homo_sapiens 0 403
ENST00000575978 EIF4A3-002 retained_intron Homo_sapiens 7.9874e-44 183
ENST00000576547 EIF4A3-005 protein_coding Homo_sapiens 0 401
ENST00000576573 EIF4A3-009 retained_intron Homo_sapiens 0 409

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