C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: golgi to ER traffic protein 4 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000026976 Get4-001 ENSMUSG00000025858 10090 + 5:139252324-139270051 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026976
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026976 23.832±3.42 43.930±6.64 32.646±5.46 21.109±11.09 20.063±7.22 20.581±2.95 17.874±2.15 22.152±1.58 17.143±9.34 29.436±2.24 12.124±1.33 36.033±15.95 17.150±9.27 18.668±8.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00018J CIL_00018J_0002 CGP 5:139200637-139270051
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_000186 CIL_000186_0002 CGP 5:139252324-139325622

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005829 ISS cytosol
GO:0006810 IEA transport
GO:0071816 ISS tail-anchored membrane protein insertion into ER membrane
GO:0071818 ISS BAT3 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265857 GET4-001 protein_coding Homo_sapiens 0 1219
ENST00000407192 GET4-002 protein_coding Homo_sapiens 0 867
ENST00000412734 GET4-006 protein_coding Homo_sapiens 0 464
ENST00000426056 GET4-004 protein_coding Homo_sapiens 0 281
ENST00000441491 GET4-003 protein_coding Homo_sapiens 0 329
ENST00000457861 SUN1-033 nonsense_mediated_decay Homo_sapiens 0 867

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