C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinol dehydrogenase 10 (all-trans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027053 Rdh10-001 ENSMUSG00000025921 10090 + 1:16105774-16133734 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027053
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027053 10.605±7.23 4.490±1.88 7.186±1.34 4.160±2.26 6.825±1.30 8.269±1.33 1.583±0.18 12.201±1.02 6.419±3.83 9.400±0.75 0.806±0.14 17.397±7.96 6.860±5.41 4.998±2.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005C3 CIL_0005C3_0003 CGP 1:16101295-16133734
CIL_0001D6 CIL_0001D6_0002 CGP 1:16105774-16520112

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IMP metanephros development
GO:0001701 IMP in utero embryonic development
GO:0002138 IMP retinoic acid biosynthetic process
GO:0004745 ISA retinol dehydrogenase activity
GO:0005737 IEA cytoplasm
GO:0005783 IEA endoplasmic reticulum
GO:0007601 ISA visual perception
GO:0008406 IMP gonad development
GO:0009887 IMP organ morphogenesis
GO:0014032 IMP neural crest cell development
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0031076 IMP embryonic camera-type eye development
GO:0035115 IMP embryonic forelimb morphogenesis
GO:0042572 IEA retinol metabolic process
GO:0042574 IEA retinal metabolic process
GO:0043583 IMP ear development
GO:0043584 IMP nose development
GO:0044297 IEA cell body
GO:0048568 IMP embryonic organ development
GO:0048703 IMP embryonic viscerocranium morphogenesis
GO:0052650 IEA NADP-retinol dehydrogenase activity
GO:0055114 IEA oxidation-reduction process
GO:0060431 IMP primary lung bud formation
GO:0060449 IMP bud elongation involved in lung branching

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000240285 RDH10-001 protein_coding Homo_sapiens 0 1570
ENST00000518870 RDH10-003 retained_intron Homo_sapiens 0 416
ENST00000519380 RDH10-002 protein_coding Homo_sapiens 0 1048
ENST00000521013 RDH10-005 retained_intron Homo_sapiens 0 394
ENST00000521928 RDH10-004 protein_coding Homo_sapiens 0 532

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