C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: eukaryotic translation initiation factor 5B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027252 Eif5b-201 ENSMUSG00000026083 10090 + 1:37998010-38055579 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027252
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027252 1.986±0.13 2.797±0.50 5.827±2.11 11.226±6.67 1.655±0.39 1.542±0.27 2.846±0.19 2.302±0.36 3.717±1.93 2.644±0.68 5.866±3.06 6.686±10.15 24.397±13.21 12.364±11.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000348 CIL_000348_0002 CGP 1:37983867-38055579
CIL_000347 CIL_000347_0002 CGP 1:37998010-38129662

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003743 IEA translation initiation factor activity
GO:0003924 IEA GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006184 IEA GTP catabolic process
GO:0006413 IEA translational initiation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000258428 REV1-001 protein_coding Homo_sapiens 0 556
ENST00000289371 EIF5B-001 protein_coding Homo_sapiens 0 4492
ENST00000393445 REV1-002 protein_coding Homo_sapiens 0 556
ENST00000413697 REV1-003 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000470023 EIF5B-002 retained_intron Homo_sapiens 0 418
ENST00000470868 EIF5B-003 retained_intron Homo_sapiens 0 713
ENST00000494190 EIF5B-004 retained_intron Homo_sapiens 0 490
ENST00000617677 EIF5B-201 protein_coding Homo_sapiens 0 4447

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