C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroid hormone receptor interactor 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027421 Trip12-201 ENSMUSG00000026219 10090 - 1:84721189-84839304 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027421
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027421 4.859±1.44 2.660±1.29 15.988±0.27 16.319±8.16 4.909±1.56 2.496±0.78 2.557±0.65 5.790±0.91 4.516±1.85 5.398±1.17 5.159±1.51 4.876±2.27 14.264±1.29 9.385±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087W CIL_00087W_0002 VISTA 1:84248810-84851347
CIL_00076T CIL_00076T_0002 CGP 1:84369839-84840516
CIL_00076Q CIL_00076Q_0002 CGP 1:84721189-84900487

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0005634 IBA nucleus
GO:0005654 ISS nucleoplasm
GO:0005737 IBA cytoplasm
GO:0006281 IEA DNA repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0009790 IMP embryo development
GO:0016874 IEA ligase activity
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0046966 IEA thyroid hormone receptor binding
GO:1901315 ISS negative regulation of histone H2A K63-linked ubiquitination
GO:2000780 ISS negative regulation of double-strand break repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087566 trip12-201 protein_coding Danio_rerio 0 2460
ENSDART00000145863 trip12-001 protein_coding Danio_rerio 0 1478
ENSDART00000138552 trip12-002 protein_coding Danio_rerio 0 196
ENST00000283943 TRIP12-001 protein_coding Homo_sapiens 0 5650
ENST00000343290 TRIP12-014 protein_coding Homo_sapiens 0 580
ENST00000389044 TRIP12-004 protein_coding Homo_sapiens 0 5276
ENST00000389045 TRIP12-005 protein_coding Homo_sapiens 0 7389
ENST00000409677 TRIP12-003 protein_coding Homo_sapiens 0 1567
ENST00000418123 TRIP12-016 protein_coding Homo_sapiens 0 457
ENST00000428959 TRIP12-008 protein_coding Homo_sapiens 0 773
ENST00000430954 TRIP12-007 protein_coding Homo_sapiens 0 503
ENST00000435716 TRIP12-006 protein_coding Homo_sapiens 0 798
ENST00000453485 TRIP12-009 protein_coding Homo_sapiens 0 497
ENST00000459841 TRIP12-015 retained_intron Homo_sapiens 0 647
ENST00000461189 TRIP12-012 retained_intron Homo_sapiens 0 377
ENST00000470302 TRIP12-017 retained_intron Homo_sapiens 0 542
ENST00000477441 TRIP12-010 retained_intron Homo_sapiens 0 601
ENST00000479037 TRIP12-002 retained_intron Homo_sapiens 0 3707
ENST00000487178 TRIP12-011 retained_intron Homo_sapiens 0 994
ENST00000495322 TRIP12-013 retained_intron Homo_sapiens 0 459

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