C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleolin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027438 Ncl-001 ENSMUSG00000026234 10090 - 1:86344719-86359400 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027438
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027438 2.395±1.50 3.699±1.00 4.331±0.03 5.690±0.73 0.950±0.53 1.542±0.39 1.714±0.42 2.074±0.46 4.870±5.60 1.776±0.55 4.266±0.95 4.990±4.09 8.266±3.85 0.676±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000899 CIL_000899_0002 VISTA 1:86187174-86788752
CIL_0007WD CIL_0007WD_0002 VISTA 1:86187834-86792789
CIL_0004KZ CIL_0004KZ_0003 CGP 1:86302832-86359400
CIL_00076N CIL_00076N_0002 CGP 1:86344719-86388162

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0001525 IEA angiogenesis
GO:0003723 ISS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005730 IDA nucleolus
GO:0005938 IEA cell cortex
GO:0008022 IEA protein C-terminus binding
GO:0016020 IEA membrane
GO:0030529 ISS ribonucleoprotein complex
GO:0036464 IEA cytoplasmic ribonucleoprotein granule
GO:0042162 ISS telomeric DNA binding
GO:0042802 IEA identical protein binding
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:1901838 IEA positive regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322723 NCL-001 protein_coding Homo_sapiens 0 2320
ENST00000356936 NCL-015 protein_coding Homo_sapiens 0 702
ENST00000416078 NCLP2-001 processed_pseudogene Homo_sapiens 0 392
ENST00000417652 NCL-011 protein_coding Homo_sapiens 0 466
ENST00000436894 NCL-013 protein_coding Homo_sapiens 0 453
ENST00000445357 NCLP1-001 processed_pseudogene Homo_sapiens 0 815
ENST00000453992 NCL-012 protein_coding Homo_sapiens 0 466
ENST00000454824 NCL-010 protein_coding Homo_sapiens 0 466
ENST00000461347 NCL-002 retained_intron Homo_sapiens 0 1253
ENST00000466274 NCL-016 retained_intron Homo_sapiens 0 464
ENST00000484328 NCL-009 retained_intron Homo_sapiens 4.99983e-42 174
ENST00000494618 NCL-014 retained_intron Homo_sapiens 0 704
ENST00000527320 RP11-672A2.7-001 processed_pseudogene Homo_sapiens 5.04467e-44 180

Loading