C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger, BED domain containing 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000027736 Zbed6-201 ENSMUSG00000094410 10090 - 1:133619871-133661380 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000027736
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000027736 4.220±0.62 2.308±0.65 43.320±12.77 12.718±7.35 7.213±2.05 8.082±2.05 3.700±1.23 5.601±3.29 11.925±6.94 4.796±0.56 16.429±1.59 14.536±7.38 17.445±9.45 1.528±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886
CIL_00096T CIL_00096T_0002 VISTA 1:133444227-134045719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 ISS transcription export complex
GO:0016973 ISS poly(A)+ mRNA export from nucleus
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332127 ZC3H11A-004 protein_coding Homo_sapiens 0 2265
ENST00000367210 ZC3H11A-001 protein_coding Homo_sapiens 0 2265
ENST00000367211 ZC3H11B-001 processed_pseudogene Homo_sapiens 0 1068
ENST00000367212 ZC3H11A-005 protein_coding Homo_sapiens 0 1315
ENST00000367214 ZC3H11A-003 protein_coding Homo_sapiens 0 1317
ENST00000398578 RP11-74E24.2-001 processed_pseudogene Homo_sapiens 0 1079
ENST00000432282 ZC3H11A-007 protein_coding Homo_sapiens 0 390
ENST00000453771 ZC3H11A-006 protein_coding Homo_sapiens 0 1456
ENST00000461980 ZC3H11A-008 processed_transcript Homo_sapiens 2e-28 130
ENST00000466470 ZC3H11A-009 processed_transcript Homo_sapiens 3e-32 143
ENST00000492823 ZC3H11A-011 processed_transcript Homo_sapiens 7e-26 121
ENST00000495527 ZC3H11A-002 nonsense_mediated_decay Homo_sapiens 0 2078
ENST00000545588 ZC3H11A-201 protein_coding Homo_sapiens 0 2265

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