C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tuberous sclerosis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028155 Tsc1-002 ENSMUSG00000026812 10090 + 2:28641237-28691167 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028155
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028155 1.435±0.71 1.581±0.42 2.040±0.14 4.997±0.19 3.773±1.28 3.501±1.27 2.412±0.56 3.561±0.79 2.736±0.90 2.609±0.00 2.373±0.86 4.479±1.42 2.932±0.82 3.122±1.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000H4 CIL_0000H4_0002 CGP 2:28609450-28691167
CIL_0002XC CIL_0002XC_0002 CGP 2:28641228-28699727

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001822 IMP kidney development
GO:0001843 IMP neural tube closure
GO:0001952 IEA regulation of cell-matrix adhesion
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005829 IEA cytosol
GO:0005856 IEA cytoskeleton
GO:0005884 IEA actin filament
GO:0005938 IEA cell cortex
GO:0006407 IEA rRNA export from nucleus
GO:0006417 IEA regulation of translation
GO:0006813 IGI potassium ion transport
GO:0007160 IEA cell-matrix adhesion
GO:0007399 IMP nervous system development
GO:0008285 IMP negative regulation of cell proliferation
GO:0016020 IEA membrane
GO:0017148 IEA negative regulation of translation
GO:0021766 IMP hippocampus development
GO:0021987 IMP cerebral cortex development
GO:0030027 IEA lamellipodium
GO:0030030 IMP cell projection organization
GO:0030426 IEA growth cone
GO:0030695 IBA GTPase regulator activity
GO:0032007 IBA negative regulation of TOR signaling
GO:0032318 IBA regulation of Ras GTPase activity
GO:0032794 IEA GTPase activating protein binding
GO:0032862 IEA activation of Rho GTPase activity
GO:0032868 IEA response to insulin
GO:0032956 IBA regulation of actin cytoskeleton organization
GO:0033596 IBA TSC1-TSC2 complex
GO:0042552 IMP myelination
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IEA protein complex
GO:0043666 IEA regulation of phosphoprotein phosphatase activity
GO:0045792 IGI negative regulation of cell size
GO:0045859 IGI regulation of protein kinase activity
GO:0046323 IMP glucose import
GO:0046627 IBA negative regulation of insulin receptor signaling pathway
GO:0047485 IPI protein N-terminus binding
GO:0050808 IMP synapse organization
GO:0050821 IEA protein stabilization
GO:0051087 IEA chaperone binding
GO:0051291 IEA protein heterooligomerization
GO:0051492 IEA regulation of stress fiber assembly
GO:0051726 IBA regulation of cell cycle
GO:0051893 IEA regulation of focal adhesion assembly
GO:0051894 IEA positive regulation of focal adhesion assembly
GO:0055007 IMP cardiac muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298552 TSC1-001 protein_coding Homo_sapiens 0 3954
ENST00000403810 TSC1-003 protein_coding Homo_sapiens 0 1352
ENST00000440111 TSC1-201 protein_coding Homo_sapiens 0 3879
ENST00000475903 TSC1-005 processed_transcript Homo_sapiens 0 815
ENST00000490179 TSC1-002 processed_transcript Homo_sapiens 0 473
ENST00000493467 TSC1-006 retained_intron Homo_sapiens 0 1557
ENST00000545250 TSC1-202 protein_coding Homo_sapiens 0 3411

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