C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: grancalcin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028257 Gca-001 ENSMUSG00000026893 10090 + 2:62664285-62694109 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028257
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028257 2.023±0.33 3.696±0.77 0.937±0.32 2.725±0.09 2.711±0.87 3.677±1.07 3.642±1.54 4.333±1.07 2.842±1.83 3.581±0.56 0.581±0.07 3.422±1.70 3.635±0.66 5.524±2.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005KY CIL_0005KY_0002 CGP 2:62595798-62694109
CIL_0005KR CIL_0005KR_0002 CGP 2:62664285-63184287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004198 IBA calcium-dependent cysteine-type endopeptidase activity
GO:0005509 ISS calcium ion binding
GO:0005737 IBA cytoplasm
GO:0005829 TAS cytosol
GO:0005886 IEA plasma membrane
GO:0006508 IBA proteolysis
GO:0042803 IEA protein homodimerization activity
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233612 GCA-003 protein_coding Homo_sapiens 0 586
ENST00000414723 GCA-010 protein_coding Homo_sapiens 0 412
ENST00000429691 GCA-012 protein_coding Homo_sapiens 0 209
ENST00000437150 GCA-001 protein_coding Homo_sapiens 0 617
ENST00000446271 GCA-011 protein_coding Homo_sapiens 0 257
ENST00000453113 GCA-014 protein_coding Homo_sapiens 0 361
ENST00000473240 GCA-013 processed_transcript Homo_sapiens 0 285
ENST00000479199 GCA-007 retained_intron Homo_sapiens 0 394
ENST00000481161 GCA-006 retained_intron Homo_sapiens 0 235
ENST00000487445 GCA-008 retained_intron Homo_sapiens 0 497

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