C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2E 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028398 Ube2e3-001 ENSMUSG00000027011 10090 + 2:78869047-78921293 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028398
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028398 11.453±4.68 66.251±23.85 11.745±0.99 35.539±21.54 21.202±15.04 25.151±2.75 7.433±1.82 17.638±4.70 20.847±10.39 25.695±7.25 4.590±0.71 40.083±18.90 17.554±4.98 5.233±2.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C2 CIL_0004C2_0003 CGP 2:77881159-78921293
CIL_0004BZ CIL_0004BZ_0003 CGP 2:78868124-79333123

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0016881 IEA acid-amino acid ligase activity
GO:0040008 IEA regulation of growth
GO:0070534 ISS protein K63-linked ubiquitination
GO:0070936 ISS protein K48-linked ubiquitination
GO:0070979 ISS protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000020550 ube2e3-001 protein_coding Danio_rerio 0 497
ENSDART00000138549 ube2e3-003 retained_intron Danio_rerio 0 398
ENST00000392415 UBE2E3-201 protein_coding Homo_sapiens 0 1873
ENST00000410062 UBE2E3-001 protein_coding Homo_sapiens 0 2146
ENST00000411687 GS1-257G1.1-001 processed_pseudogene Homo_sapiens 0 845
ENST00000602291 UBE2E3-012 protein_coding Homo_sapiens 0 965
ENST00000602303 UBE2E3-007 protein_coding Homo_sapiens 0 870
ENST00000602475 UBE2E3-005 protein_coding Homo_sapiens 0 571
ENST00000602479 UBE2E3-004 protein_coding Homo_sapiens 0 902
ENST00000602499 UBE2E3-006 protein_coding Homo_sapiens 0 627
ENST00000602632 UBE2E3-008 protein_coding Homo_sapiens 0 403
ENST00000602710 UBE2E3-002 protein_coding Homo_sapiens 0 1890
ENST00000602762 UBE2E3-010 processed_transcript Homo_sapiens 0 411
ENST00000602837 UBE2E3-013 processed_transcript Homo_sapiens 0 854
ENST00000602888 UBE2E3-011 retained_intron Homo_sapiens 0 761
ENST00000602959 UBE2E3-003 protein_coding Homo_sapiens 0 1286
ENST00000602970 UBE2E3-009 processed_transcript Homo_sapiens 0 226

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