C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone aminotransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028408 Hat1-201 ENSMUSG00000027018 10090 + 2:71389260-71441622 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028408
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028408 4.355±1.74 1.270±0.23 10.625±1.83 12.733±7.09 3.084±0.63 1.260±0.33 5.074±0.36 4.368±0.75 30.607±34.32 3.235±0.42 6.705±0.34 6.085±6.51 50.479±20.85 9.536±3.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RB CIL_0007RB_0003 VISTA 2:71118479-71722071
CIL_0008A7 CIL_0008A7_0002 VISTA 2:71118555-71719483
CIL_0008C9 CIL_0008C9_0002 VISTA 2:71216484-71818219
CIL_0009AY CIL_0009AY_0002 VISTA 2:71227336-71828847
CIL_0008AZ CIL_0008AZ_0002 VISTA 2:71235378-71836557
CIL_0008B0 CIL_0008B0_0002 VISTA 2:71237156-71838581
CIL_0007JJ CIL_0007JJ_002C UCNEbase 2:71244754-71538420
CIL_0004K0 CIL_0004K0_0002 CGP 2:71271063-71441622
CIL_0004K4 CIL_0004K4_0002 CGP 2:71388958-71525194

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0006348 IEA chromatin silencing at telomere
GO:0007584 IEA response to nutrient
GO:0010485 ISS H4 histone acetyltransferase activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0043234 IEA protein complex
GO:0043967 ISS histone H4 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264108 HAT1-001 protein_coding Homo_sapiens 0 1722
ENST00000392584 HAT1-006 retained_intron Homo_sapiens 0 510
ENST00000412731 HAT1-002 nonsense_mediated_decay Homo_sapiens 0 1469
ENST00000457761 HAT1-003 nonsense_mediated_decay Homo_sapiens 0 1103
ENST00000494601 HAT1-004 retained_intron Homo_sapiens 0 1709

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