C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028522 Itga6-001 ENSMUSG00000027111 10090 + 2:71786978-71856758 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028522
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028522 15.421±4.73 6.005±1.31 7.299±0.00 1.495±0.00 6.907±2.62 5.562±0.62 3.431±0.00 1.202±0.74 9.518±1.25 0.712±0.00 6.862±3.71 12.963±5.08 1.053±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008C9 CIL_0008C9_0002 VISTA 2:71216484-71818219
CIL_0009AY CIL_0009AY_0002 VISTA 2:71227336-71828847
CIL_0008AZ CIL_0008AZ_0002 VISTA 2:71235378-71836557
CIL_0008B0 CIL_0008B0_0002 VISTA 2:71237156-71838581
CIL_0003IK CIL_0003IK_0003 CGP 2:71543408-71858416
CIL_0004K8 CIL_0004K8_0002 CGP 2:71745616-71903858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 IPI integrin binding
GO:0005604 IDA basement membrane
GO:0005886 IDA plasma membrane
GO:0007160 IMP cell-matrix adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0008305 IDA integrin complex
GO:0009897 IDA external side of plasma membrane
GO:0009925 IDA basal plasma membrane
GO:0009986 IDA cell surface
GO:0016323 IDA basolateral plasma membrane
GO:0022409 IDA positive regulation of cell-cell adhesion
GO:0030056 IDA hemidesmosome
GO:0031668 IDA cellular response to extracellular stimulus
GO:0033627 IDA cell adhesion mediated by integrin
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0045178 IDA basal part of cell
GO:0046847 IMP filopodium assembly
GO:0046872 IEA metal ion binding
GO:0050873 IDA brown fat cell differentiation
GO:0050900 IMP leukocyte migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264107 ITGA6-001 protein_coding Homo_sapiens 0 4104
ENST00000409080 ITGA6-004 protein_coding Homo_sapiens 0 3456
ENST00000409532 ITGA6-003 protein_coding Homo_sapiens 0 3177
ENST00000416789 ITGA6-006 protein_coding Homo_sapiens 0 527
ENST00000442250 ITGA6-010 protein_coding Homo_sapiens 0 2591
ENST00000458358 ITGA6-011 protein_coding Homo_sapiens 0 2591
ENST00000469534 ITGA6-007 retained_intron Homo_sapiens 0 385
ENST00000470259 ITGA6-008 retained_intron Homo_sapiens 0 189
ENST00000475302 ITGA6-009 retained_intron Homo_sapiens 0 584

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