C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin protein ligase E3 component n-recognin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028728 Ubr1-001 ENSMUSG00000027272 10090 - 2:120860269-120970715 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028728
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028728 3.024±0.51 2.829±0.73 4.137±1.44 6.315±3.76 2.891±0.65 1.649±0.45 1.998±0.42 2.840±0.34 2.159±1.55 6.387±0.67 2.696±0.54 3.713±1.75 3.054±0.98 2.517±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YF CIL_0005YF_0002 CGP 2:120732816-120970715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000151 IGI ubiquitin ligase complex
GO:0000502 IGI proteasome complex
GO:0004842 IGI ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0006511 IMP ubiquitin-dependent protein catabolic process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0032007 ISS negative regulation of TOR signaling
GO:0070728 IEA leucine binding
GO:0071233 ISS cellular response to leucine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000290650 UBR1-001 protein_coding Homo_sapiens 0 6431
ENST00000546274 UBR1-002 protein_coding Homo_sapiens 0 3971
ENST00000562173 UBR1-008 retained_intron Homo_sapiens 0 473
ENST00000563239 UBR1-009 nonsense_mediated_decay Homo_sapiens 0 281
ENST00000564540 UBR1-004 nonsense_mediated_decay Homo_sapiens 0 621
ENST00000568782 UBR1-006 processed_transcript Homo_sapiens 0 592
ENST00000569066 UBR1-003 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000569243 UBR1-005 protein_coding Homo_sapiens 0 597
ENST00000569971 UBR1-010 nonsense_mediated_decay Homo_sapiens 0 521

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