C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma-like 1 (p107)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029170 Rbl1-001 ENSMUSG00000027641 10090 - 2:157145893-157204512 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029170
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029170 2.905±1.28 1.928±0.28 2.267±0.12 4.875±0.17 3.041±1.29 5.469±1.05 0.496±0.08 1.952±0.32 5.497±5.68 3.722±0.69 0.326±0.13 3.966±1.28 3.672±1.41 4.610±1.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004ZW CIL_0004ZW_0002 CGP 2:157097533-157204534
CIL_0004XV CIL_0004XV_0002 CGP 2:157145893-157279549

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0007049 IEA cell cycle
GO:0008134 IEA transcription factor binding
GO:0016568 IEA chromatin modification
GO:0043550 IEA regulation of lipid kinase activity
GO:0051726 IEA regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344359 RBL1-002 protein_coding Homo_sapiens 0 3448
ENST00000373664 RBL1-001 protein_coding Homo_sapiens 0 3679
ENST00000527999 RBL1-003 nonsense_mediated_decay Homo_sapiens 0 375

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