C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: coiled-coil domain containing 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029222 Ccdc39-001 ENSMUSG00000027676 10090 - 3:33812362-33844301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLungOvaryTestisENSMUST00000029222
Transcript ID Brain Lung Ovary Testis
ENSMUST00000029222 7.946±1.33 2.871±0.00 6.599±0.94 34.549±5.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001FH CIL_0001FH_0002 CGP 3:32949408-33814860
CIL_00081N CIL_00081N_0002 VISTA 3:33582396-34183856
CIL_00081O CIL_00081O_0002 VISTA 3:33605209-34206178
CIL_0001FQ CIL_0001FQ_0002 CGP 3:33799955-33844310
CIL_0008UV CIL_0008UV_0002 VISTA 3:33803627-34405807
CIL_0001FR CIL_0001FR_0002 CGP 3:33812362-34069342

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001947 IEA heart looping
GO:0003674 ND molecular_function
GO:0005856 IEA cytoskeleton
GO:0005930 ISS axoneme
GO:0030324 IEA lung development
GO:0035469 IEA determination of pancreatic left/right asymmetry
GO:0060285 ISS cilium-dependent cell motility
GO:0060287 ISS epithelial cilium movement involved in determination of left/right asymmetry
GO:0070286 ISS axonemal dynein complex assembly
GO:0071907 IEA determination of digestive tract left/right asymmetry
GO:0071910 IEA determination of liver left/right asymmetry

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000442201 CCDC39-001 protein_coding Homo_sapiens 0 2074
ENST00000476379 CCDC39-002 nonsense_mediated_decay Homo_sapiens 0 1567

Loading