C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ventricular zone expressed PH domain-containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029419 Veph1-001 ENSMUSG00000027831 10090 - 3:66053558-66296837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029419
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029419 0.076±0.04 0.034±0.02 0.011±0.00 0.664±0.20 0.020±0.00 0.026±0.01 0.034±0.00 3.168±0.99 0.046±0.04 0.301±0.10 0.003±0.00 0.188±0.06 0.095±0.10 0.113±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081H CIL_00081H_0002 VISTA 3:65626895-66230134
CIL_00028W CIL_00028W_0002 CGP 3:65946151-66296837
CIL_0004JX CIL_0004JX_0003 CGP 3:66053558-66296837

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000362010 VEPH1-001 protein_coding Homo_sapiens 0 2675
ENST00000392832 VEPH1-005 protein_coding Homo_sapiens 0 2610
ENST00000392833 VEPH1-004 protein_coding Homo_sapiens 0 1890
ENST00000469007 VEPH1-016 processed_transcript Homo_sapiens 0 246
ENST00000472419 VEPH1-018 retained_intron Homo_sapiens 0 416
ENST00000482685 VEPH1-015 processed_transcript Homo_sapiens 0 540
ENST00000488772 VEPH1-017 processed_transcript Homo_sapiens 0 449

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