C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine rich repeat containing 39
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029573 Lrrc39-001 ENSMUSG00000027961 10090 + 3:116562978-116583134 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000029573
Transcript ID Adipose Adrenal Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000029573 2.314±1.23 0.505±0.18 3.133±1.64 9.913±1.94 0.305±0.05 1.748±1.03 0.855±0.17 8.701±2.92 0.804±0.33 1.430±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007EW CIL_0007EW_0002 CGP 3:116513070-116583134
CIL_0006G0 CIL_0006G0_0002 CGP 3:116562973-116614587

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342895 LRRC39-201 protein_coding Homo_sapiens 0 1123
ENST00000370137 LRRC39-001 protein_coding Homo_sapiens 0 1123
ENST00000370138 LRRC39-002 protein_coding Homo_sapiens 0 1105
ENST00000370141 TRMT13-001 protein_coding Homo_sapiens 0 466
ENST00000620882 LRRC39-202 protein_coding Homo_sapiens 0 1105

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