C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha-kinase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029662 Alpk1-001 ENSMUSG00000028028 10090 - 3:127670932-127780513 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029662
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029662 0.514±0.25 2.085±0.00 0.255±0.08 0.547±0.21 1.516±0.43 0.296±0.13 0.072±0.02 0.769±0.00 0.248±0.00 0.690±0.39 0.237±0.08 0.493±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WR CIL_0008WR_0002 VISTA 3:127326841-127927904
CIL_00080F CIL_00080F_0002 VISTA 3:127613726-128215301
CIL_0007P9 CIL_0007P9_0002 UCNEbase 3:127625906-129219414

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0004674 IEA protein serine/threonine kinase activity
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0006468 IEA protein phosphorylation
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000177648 ALPK1-001 protein_coding Homo_sapiens 0 1567
ENST00000458497 ALPK1-201 protein_coding Homo_sapiens 0 1628
ENST00000504176 ALPK1-202 protein_coding Homo_sapiens 0 1181
ENST00000504745 ALPK1-007 retained_intron Homo_sapiens 0 965
ENST00000505127 ALPK1-005 nonsense_mediated_decay Homo_sapiens 0 1070
ENST00000508589 ALPK1-015 processed_transcript Homo_sapiens 0 270
ENST00000509688 ALPK1-002 retained_intron Homo_sapiens 0 390
ENST00000509722 ALPK1-008 nonsense_mediated_decay Homo_sapiens 0 1181
ENST00000512847 ALPK1-016 retained_intron Homo_sapiens 2e-28 130
ENST00000515330 ALPK1-006 nonsense_mediated_decay Homo_sapiens 0 634

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