C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UBX domain protein 2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000029907 Ubxn2b-001 ENSMUSG00000028243 10090 + 4:6191098-6221688 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000029907
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000029907 2.037±1.14 5.284±0.44 2.454±0.32 3.987±0.87 1.618±0.42 1.388±0.28 0.597±0.05 2.697±0.32 3.175±3.02 2.213±0.23 0.215±0.06 5.107±0.60 0.970±0.52 1.213±0.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003J1 CIL_0003J1_0002 CGP 4:5644090-6221688
CIL_0008CM CIL_0008CM_0002 VISTA 4:5662013-6263794
CIL_0002RI CIL_0002RI_0002 CGP 4:6191098-6275633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399598 UBXN2B-001 protein_coding Homo_sapiens 0 1216
ENST00000451057 RP4-814D15.1-001 processed_pseudogene Homo_sapiens 0 721
ENST00000520732 UBXN2B-004 nonsense_mediated_decay Homo_sapiens 0 604
ENST00000521796 UBXN2B-006 protein_coding Homo_sapiens 0 420
ENST00000522978 UBXN2B-002 processed_transcript Homo_sapiens 0 468
ENST00000523409 UBXN2B-005 nonsense_mediated_decay Homo_sapiens 0 590

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