C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030731 Taf12-001 ENSMUSG00000028899 10090 + 4:132274375-132295766 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030731
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030731 2.608±0.28 0.690±0.20 2.796±0.31 2.586±0.52 1.665±0.31 1.598±0.44 1.429±0.20 2.631±0.26 3.638±2.81 1.890±0.26 1.687±0.20 2.031±0.86 3.294±0.65 2.091±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227
CIL_0001X2 CIL_0001X2_0002 CGP 4:132274375-132303385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000125 IEA PCAF complex
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0004402 IEA histone acetyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0030914 IDA STAGA complex
GO:0033276 IEA transcription factor TFTC complex
GO:0043966 IEA histone H3 acetylation
GO:0046982 IEA protein heterodimerization activity
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:2001141 IEA regulation of RNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000154222 taf12-004 retained_intron Danio_rerio 0 276
ENSDART00000155673 taf12-002 protein_coding Danio_rerio 0 276
ENSDART00000156736 taf12-003 protein_coding Danio_rerio 0 276
ENSDART00000124208 taf12-001 protein_coding Danio_rerio 0 276
ENSDART00000123639 taf12-202 protein_coding Danio_rerio 0 265
ENSDART00000076222 taf12-201 protein_coding Danio_rerio 0 265
ENST00000263974 TAF12-001 protein_coding Homo_sapiens 0 1291
ENST00000343936 ZC3H6-201 protein_coding Homo_sapiens 0.000001 62
ENST00000373824 TAF12-002 protein_coding Homo_sapiens 0 1423
ENST00000409871 ZC3H6-001 protein_coding Homo_sapiens 0.000001 62
ENST00000471683 TAF12-003 processed_transcript Homo_sapiens 0 401
ENST00000495422 TAF12-004 processed_transcript Homo_sapiens 0 579

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