C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, U
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030741 Ptpru-003 ENSMUSG00000028909 10090 - 4:131769498-131838231 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleOvaryENSMUST00000030741
Transcript ID Liver Muscle Ovary
ENSMUST00000030741 0.019±0.00 0.046±0.02 2.542±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005886 IEA plasma membrane
GO:0005911 IEA cell-cell junction
GO:0008013 IPI beta-catenin binding
GO:0008285 IEA negative regulation of cell proliferation
GO:0016021 IEA integral component of membrane
GO:0016337 IEA single organismal cell-cell adhesion
GO:0030154 IEA cell differentiation
GO:0030336 IEA negative regulation of cell migration
GO:0031100 IEA organ regeneration
GO:0034109 IDA homotypic cell-cell adhesion
GO:0034394 IEA protein localization to cell surface
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0051384 IEA response to glucocorticoid
GO:0060070 IEA canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000083939 PTPRU (3 of 3)-202 protein_coding Danio_rerio 0 196
ENSDART00000036656 PTPRU (3 of 3)-201 protein_coding Danio_rerio 0 196
ENST00000345512 PTPRU-003 protein_coding Homo_sapiens 0 5395
ENST00000373779 PTPRU-001 protein_coding Homo_sapiens 0 2843
ENST00000415600 PTPRU-006 processed_transcript Homo_sapiens 0 1914
ENST00000428026 PTPRU-008 protein_coding Homo_sapiens 0 2843
ENST00000460170 PTPRU-002 protein_coding Homo_sapiens 0 2843
ENST00000465525 PTPRU-004 retained_intron Homo_sapiens 0 793
ENST00000493601 PTPRU-007 processed_transcript Homo_sapiens 0 891
ENST00000527027 PTPRU-009 processed_transcript Homo_sapiens 0 667
ENST00000531385 PTPRU-010 retained_intron Homo_sapiens 0 243

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