C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, ATPase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030769 Psmc2-001 ENSMUSG00000028932 10090 + 5:21785283-21803787 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030769
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030769 21.417±1.72 5.863±2.54 43.107±5.25 33.372±12.16 12.590±4.10 11.774±1.79 21.714±0.96 21.168±5.37 32.887±15.81 14.752±4.41 53.361±1.04 22.775±20.10 57.013±16.30 109.546±3.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0002 VISTA 5:21195900-21797355
CIL_0005C8 CIL_0005C8_0002 CGP 5:21757267-21803787
CIL_0001RC CIL_0001RC_0003 CGP 5:21785283-21865604

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0001649 IEA osteoblast differentiation
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity
GO:0022624 IDA proteasome accessory complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292644 PSMC2-201 protein_coding Homo_sapiens 0 1598
ENST00000425206 PSMC2-002 protein_coding Homo_sapiens 0 597
ENST00000435765 PSMC2-001 protein_coding Homo_sapiens 0 1688
ENST00000457587 PSMC2-003 protein_coding Homo_sapiens 0 597
ENST00000460021 PSMC2-004 retained_intron Homo_sapiens 0 455
ENST00000470499 RP11-64K7.1-001 processed_pseudogene Homo_sapiens 0 1349

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