C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP-binding cassette, sub-family F (GCN20), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030795 Abcf2-201 ENSMUSG00000028953 10090 - 5:24565341-24577467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030795
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030795 21.452±0.85 36.466±11.13 13.823±4.98 29.471±8.31 26.019±6.30 18.079±5.78 16.143±1.87 16.789±3.58 19.174±7.78 24.179±4.88 42.961±5.61 34.481±14.10 26.227±16.98 70.190±9.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0004EM CIL_0004EM_0002 CGP 5:24543434-24577467

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005739 IDA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0008150 ND biological_process
GO:0016020 IEA membrane
GO:0016887 IEA ATPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000074155 BX322787.1-201 protein_coding Danio_rerio 0 1079
ENST00000222388 ABCF2-003 protein_coding Homo_sapiens 0 2593
ENST00000287844 ABCF2-001 protein_coding Homo_sapiens 0 3033
ENST00000441774 ABCF2-004 protein_coding Homo_sapiens 0 1002
ENST00000465687 ABCF2P1-001 processed_pseudogene Homo_sapiens 0 2043
ENST00000468073 ABCF2-006 protein_coding Homo_sapiens 0 1184
ENST00000473874 ABCF2-007 processed_transcript Homo_sapiens 0 588

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