C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030879 Clcn6-201 ENSMUSG00000029016 10090 - 4:148006134-148038813 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLungMuscleOvaryPlacentaENSMUST00000030879
Transcript ID Adipose Adrenal Brain Colon Heart Lung Muscle Ovary Placenta
ENSMUST00000030879 1.228±0.53 1.034±0.14 5.056±1.60 0.872±0.00 0.500±0.00 2.011±0.00 0.368±0.10 2.587±0.78 3.897±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00087H CIL_00087H_0002 VISTA 4:147665245-148272946

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 IEA voltage-gated chloride channel activity
GO:0005524 IEA ATP binding
GO:0005765 IEA lysosomal membrane
GO:0005768 IEA endosome
GO:0006821 IEA chloride transport
GO:0009612 IEA response to mechanical stimulus
GO:0015297 IEA antiporter activity
GO:0016021 IEA integral component of membrane
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312413 CLCN6-201 protein_coding Homo_sapiens 0 3097
ENST00000346436 CLCN6-001 protein_coding Homo_sapiens 0 3434
ENST00000376486 MTHFR-003 protein_coding Homo_sapiens 1e-37 161
ENST00000376490 CLCN6-002 processed_transcript Homo_sapiens 0 1199
ENST00000376491 CLCN6-004 processed_transcript Homo_sapiens 0 1110
ENST00000376492 CLCN6-003 processed_transcript Homo_sapiens 0 1247
ENST00000376496 CLCN6-005 protein_coding Homo_sapiens 0 3288
ENST00000376497 CLCN6-006 protein_coding Homo_sapiens 0 514
ENST00000494028 CLCN6-007 processed_transcript Homo_sapiens 0 446

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