C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peptidase (mitochondrial processing) beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030882 Pmpcb-001 ENSMUSG00000029017 10090 + 5:21737141-21757152 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030882
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030882 36.030±8.16 49.908±3.08 27.048±2.74 31.167±2.79 34.185±14.37 19.991±1.97 59.733±3.01 74.608±5.53 43.470±7.92 15.415±0.81 34.043±1.91 35.018±16.36 44.784±12.06 55.149±11.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y6 CIL_0007Y6_0002 VISTA 5:21195900-21797355
CIL_0005CJ CIL_0005CJ_0002 CGP 5:21662901-21757152
CIL_0001RL CIL_0001RL_0003 CGP 5:21737141-21785251

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0004222 IEA metalloendopeptidase activity
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0006508 IEA proteolysis
GO:0008152 IEA metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000249269 PMPCB-001 protein_coding Homo_sapiens 0 1587
ENST00000428154 PMPCB-007 protein_coding Homo_sapiens 0 1526
ENST00000443722 PMPCB-006 nonsense_mediated_decay Homo_sapiens 0 1253
ENST00000444457 PMPCB-002 nonsense_mediated_decay Homo_sapiens 0 1524
ENST00000453466 PMPCB-004 nonsense_mediated_decay Homo_sapiens 0 1565
ENST00000456433 PMPCB-009 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000498530 PMPCB-005 retained_intron Homo_sapiens 0 1088

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