C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030914 Rer1-001 ENSMUSG00000029048 10090 - 4:155074110-155086373 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030914
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030914 45.458±9.63 57.130±9.70 53.808±15.40 14.210±4.34 39.978±22.65 79.894±11.38 28.898±1.45 74.205±21.70 42.241±13.64 59.449±5.73 20.893±9.16 41.770±3.53 59.142±14.34 20.016±8.62

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0002 VISTA 4:154934679-155536167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005793 IDA endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 IEA Golgi apparatus
GO:0006890 IEA retrograde vesicle-mediated transport, Golgi to ER
GO:0007528 IMP neuromuscular junction development
GO:0009986 IDA cell surface
GO:0030173 IEA integral component of Golgi membrane
GO:0033130 IPI acetylcholine receptor binding
GO:0071340 IMP skeletal muscle acetylcholine-gated channel clustering
GO:0090004 IMP positive regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306256 RER1-008 protein_coding Homo_sapiens 0 686
ENST00000378512 RER1-002 protein_coding Homo_sapiens 0 549
ENST00000378513 RER1-201 protein_coding Homo_sapiens 0 1123
ENST00000378518 RER1-004 protein_coding Homo_sapiens 0 381
ENST00000443438 RER1-006 protein_coding Homo_sapiens 0 606
ENST00000462129 RER1-007 retained_intron Homo_sapiens 0 353
ENST00000488353 RER1-003 protein_coding Homo_sapiens 0 815
ENST00000493207 RER1-005 retained_intron Homo_sapiens 0 226
ENST00000605895 RER1-001 protein_coding Homo_sapiens 0 1092

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